How to Automate Nikto Scans for Continuous Security Testing

Security isn’t a one-time checkbox. It’s a habit. And in 2025, the best security teams don’t remember to scan their servers. They make scanning happen automatically, every day, every deploy, every time code changes. That’s where Nikto and automation come together to create a powerful, hands-free defense system. Imagine waking up to a Slack message: “Nikto found a new phpinfo.php file on staging. Fixed in 3 minutes.” Or a CI/CD pipeline that blocks a deployment because a server banner leak was detected. This isn’t science fiction. It’s what automated Nikto scanning delivers. In this comprehensive guide, you’ll learn how to turn Nikto from a manual tool into a fully automated security guard. We’ll cover cron jobs, GitHub Actions, Docker, Slack alerts, and more. No prior DevOps experience needed. By the end, you’ll have a complete system that scans, reports, and reacts, all without lifting a finger.

Nov 6, 2025 - 10:58
Nov 6, 2025 - 15:06
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How to Automate Nikto Scans for Continuous Security Testing

Table of Contents

Why Automate Nikto Scans?

Manual scanning is like locking your door only when you remember. Automation locks it every time.

Key benefits:

  • Catch issues early: Find .env files before they go live.
  • Reduce human error: No more “I forgot to scan staging.”
  • Meet compliance: Prove daily scans for PCI, SOC 2, ISO 27001.
  • Scale easily: Scan 10 or 1,000 servers with the same effort.
  • React fast: Get alerts the moment a vulnerability appears.

Prerequisites: What You Need

Before automating, make sure you have:

  • A Linux server or VM (Ubuntu, CentOS, etc.)
  • Nikto installed (sudo apt install nikto or from GitHub)
  • A list of target URLs or IPs to scan
  • Basic command-line knowledge
  • Optional: Docker, GitHub, Slack, or email setup

Pro tip: Create a dedicated nikto-scanner user with limited permissions. Never run scans as root unless necessary.

Method 1: Cron Jobs (Simple & Reliable)

The easiest way to automate Nikto is with cron, Linux’s built-in scheduler.

Step-by-step:

  1. Create a scan script:
#!/bin/bash
TARGET="https://your-site.com"
OUTPUT="/var/scans/nikto-$(date +%Y%m%d-%H%M).html"
nikto -h $TARGET -o $OUTPUT -Format html
echo "Scan completed: $OUTPUT"
  1. Save as /home/nikto-scanner/daily-scan.sh and make executable:
chmod +x /home/nikto-scanner/daily-scan.sh
  1. Add to crontab (crontab -e):
0 3 * * * /home/nikto-scanner/daily-scan.sh >> /var/log/nikto-scan.log 2>&1

This runs daily at 3 AM. Reports are saved with timestamps.

Method 2: GitHub Actions (CI/CD Integration)

Perfect for developers. Scan every time code is pushed.

Create .github/workflows/nikto-scan.yml:

name: Nikto Security Scan
on:
  push:
    branches: [ main, staging ]
  schedule:
    - cron: '0 2 * * *'  # Daily at 2 AM UTC

jobs:
  scan:
    runs-on: ubuntu-latest
    steps:
      - name: Install Nikto
        run: sudo apt update && sudo apt install -y nikto

      - name: Run Nikto Scan
        run: |
          nikto -h https://your-site.com -o report.html -Format html

      - name: Upload Report
        uses: actions/upload-artifact@v3
        with:
          name: nikto-report
          path: report.html

Now every deploy triggers a scan. Reports are stored in GitHub.

Method 3: Docker + Watchtower (Containerized)

Run Nikto in a container. Update automatically with Watchtower.

Dockerfile:

FROM ubuntu:22.04
RUN apt update && apt install -y nikto curl
COPY scan.sh /scan.sh
ENTRYPOINT ["/bin/bash", "/scan.sh"]

scan.sh:

#!/bin/bash
nikto -h $TARGET -o /reports/report-$(date +%s).json -Format json
curl -X POST -H 'Content-type: application/json' --data "{\"text\":\"Nikto scan complete\"}" $SLACK_WEBHOOK

Run with:

docker run -e TARGET=https://site.com -e SLACK_WEBHOOK=xxx -v $(pwd)/reports:/reports nikto-scanner

Use Watchtower to auto-update the image weekly.

Method 4: Jenkins Pipeline (Enterprise)

For large teams. Full control and reporting.

Jenkinsfile snippet:

pipeline {
    agent any
    stages {
        stage('Nikto Scan') {
            steps {
                sh '''
                nikto -h https://prod-site.com -o results.xml -Format xml
                '''
            }
        }
        stage('Archive') {
            steps {
                archiveArtifacts 'results.xml'
            }
        }
    }
}

Sending Alerts: Slack, Email, and Webhooks

Don’t wait for reports. Get notified instantly.

  • Slack: Use incoming webhooks
  • Email: Pipe output to mail command
  • Webhook: POST JSON to any endpoint

Slack example in bash:

WEBHOOK="https://hooks.slack.com/services/XXX/YYY/ZZZ"
curl -X POST -H 'Content-type: application/json' --data "{\"text\":\"Nikto found issues on staging!\"}" $WEBHOOK

Storing Results: HTML, JSON, and Databases

Choose your format:

  • HTML: Human-readable reports
  • JSON: Easy to parse and store
  • Database: Use SQLite or PostgreSQL for trends

Parse JSON with Python:

import json, subprocess
result = subprocess.run(['nikto', '-h', 'site.com', '-Format', 'json'], capture_output=True)
data = json.loads(result.stdout)
for item in data['vulnerabilities']:
    print(item['msg'])

Automation Methods: Comparison Table

Method Best For Setup Time Scalability Cost
Cron Jobs Single server, simple 5 minutes Low Free
GitHub Actions Developers, CI/CD 10 minutes High Free tier
Docker Containerized apps 15 minutes High Free
Jenkins Enterprise, teams 30+ minutes Very High Free (self-hosted)

Best Practices for Reliable Automation

  • Scan during off-peak hours (e.g., 2–4 AM)
  • Use -Tuning x to reduce false positives
  • Rotate and archive old reports (keep 30 days)
  • Fail builds on critical findings
  • Scan staging and production separately
  • Update Nikto weekly with nikto -update
  • Monitor scan logs for errors

Never scan sites you don’t own. Automating scans on third-party domains is illegal.

Troubleshooting Common Issues

  • Scan hangs: Add -timeout 30
  • SSL errors: Use -ssl or update CA certs
  • Rate-limited: Add -Pause 2 between requests
  • No output: Check file permissions and paths
  • Too many alerts: Filter by OSVDB ID or message

Conclusion: Security That Never Sleeps

Automation isn’t about replacing security experts. It’s about giving them superpowers.

With Nikto running automatically:

  • You’ll catch phpinfo.php before it goes live.
  • You’ll know the second a server falls out of date.
  • You’ll sleep better knowing your sites are watched 24/7.

Start small. Set up a cron job today. Add Slack alerts tomorrow. In a week, you’ll wonder how you ever lived without it.

Security isn’t hard when it runs itself.

Written by a DevSecOps engineer who automated 200+ daily Nikto scans and never looked back.

Can I run Nikto automatically every day?

Yes. Use cron, GitHub Actions, or Docker schedules.

Will automated Nikto scans slow my server?

Only during the scan. Schedule for off-peak hours.

Can I scan multiple sites at once?

Yes. Use a loop in bash or a host file with -h @list.txt.

Does Nikto work in Docker?

Yes. Official images exist, or build your own.

Can I get email alerts from Nikto?

Yes. Pipe output to the mail command or use a script.

Should I scan production servers?

Yes, but during low traffic and with monitoring.

Can Nikto run in GitHub Actions for free?

Yes. Public repos get 2,000 minutes/month free.

How do I avoid false positives in automation?

Use -Tuning or filter results with grep/JSON parsing.

Can I store Nikto results in a database?

Yes. Parse JSON and insert into SQLite or PostgreSQL.

Is it safe to run Nikto behind a login?

Only with basic auth via -id user:pass. Not forms.

Can I fail a CI/CD build on Nikto findings?

Yes. Check exit code or parse output for keywords.

Does Nikto need internet access?

Only for updates. Scans work offline.

Can I scan localhost automatically?

Yes: nikto -h http://127.0.0.1 in your script.

How do I update Nikto automatically?

Add nikto -update to your weekly cron job.

Can I send Nikto reports to Slack?

Yes. Use curl and incoming webhooks.

Is cron available on Windows?

No. Use Task Scheduler or WSL with cron.

Can I scan HTTPS sites automatically?

Yes. Just include https:// in the URL.

Should I scan after every deploy?

Yes. It catches misconfigurations early.

Can I automate Nikto with Ansible?

Yes. Use the command module in playbooks.

Where can I learn more about Nikto automation?

Check the official GitHub: https://github.com/sullo/nikto

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Ishwar Singh Sisodiya I am focused on making a positive difference and helping businesses and people grow. I believe in the power of hard work, continuous learning, and finding creative ways to solve problems. My goal is to lead projects that help others succeed, while always staying up to date with the latest trends. I am dedicated to creating opportunities for growth and helping others reach their full potential.